目录
2019.09 – 2023.04 美国马里兰大学/美国农业部农业研究中心 博士后
2018.01 – 2019.01 丹麦奥胡斯大学 数量遗传学与基因组学研究中心 博士
2008.09–2012.07 山西农业大学 动物科学学院 动物科学专业 农学学士
2. 科技部, 国家重点研发计划子课题，2023YFD1300400，影响猪繁殖性状功能基因及调控元件筛选及功能解析，2023.12-2028.11，80万元, 在研，主持
3. 国家自然科学基金委，国家自然科学基金青年项目，32402714，整合多组学数据鉴定母猪繁殖性状的关键结构变异，2025.01-2027.12，30万元，在研，主持
4. 广州市科学技术局，广州市基础与应用基础研究专题项目-启航，2024A04J3806，基于三代测序鉴定影响猪繁殖性状的结构变异，2024.01.01-2025.12.31，5万元，在研，主持
2. Yahui Gao, George E Liu, Li Ma, Cong-Jun Li, Ransom L Baldwin 6th. A resource of longitudinal RNA-seq data of Holstein cow rumen, duodenum, and colon epithelial cells during the lactation cycle. BMC Genomic Data. 2025;26(1):9
3. Yahui Gao#, Xueyan Feng#, Shuqi Diao, Yuqiang Liu, Zhanming Zhong, Xiaotian Cai, Guangzhen Li, Jinyan Teng, Xiaohong Liu, Jiaqi Li, Zhe Zhang. Deciphering genetic characteristics of South China and North China indigenous pigs through selection signatures. BMC Genomics. 2024;25(1):1191
4. Haonan Zeng, Kaixuan Guo, Zhanming Zhong, Jinyan Teng, Zhiting Xu, Chen Wei, Shaolei Shi, Zhe Zhang, Yahui Gao*. Benchmarking 24 combinations of genotype pre-phasing and imputation software for SNP arrays in pigs. Journal of Integrative Agriculture. 2024
5. Yahui Gao, George E. Liu, Li M, Lingzhao Fang, Cong-jun Li, Ransom L. Baldwin VI. Transcriptomic profiling of gastrointestinal tracts in dairy cattle during lactation reveals molecular adaptations for milk synthesis. Journal of Advanced Research. 2024
6. Jinyan Teng#, Yahui Gao#, Hongwei Yin#, Zhonghao Bai#, Shuli Liu#, Haonan Zeng#; PigGTEx Consortium; Lijing Bai, Zexi Cai, Bingru Zhao, Xiujin Li, Zhiting Xu, Qing Lin, Zhangyuan Pan, Wenjing Yang, Xiaoshan Yu, Dailu Guan, Yali Hou, Brittney N Keel, Gary A Rohrer, Amanda K Lindholm-Perry, William T Olive, Maria Ballester, Daniel Crespo-Piazuelo, Raquel Quintanilla, Oriol Canela-Xandri, Konrad Rawlik, Charley Xia, Yuelin Yao, Qianyi Zhao, Wenye Yao, Liu Yang, Houcheng Li, Huicong Zhang, Wang Liao, Tianshuo Chen, Peter Karlskov-Mortensen, Merete Fredholm, Marcel Amill, Alex Clop, Elisabetta Giuffra, Jun Wu, Xiaodian Cai, Shuqi Diao, Xiangchun Pan, Chen Wei, Jinghui Li, Hao Cheng, Sheng Wang, Guosheng Su, Goutam Sahana, Mogens Sandø Lund, Jack C M Dekkers, Luke Kramer, Christopher K Tuggle, Ryan Corbett, Martien A M Groenen, Ole Madsen, Marta Gòdia, Dominique Rocha, Mathieu Charles, Cong-Jun Li, Hubert Pausch, Xiaoxiang Hu, Laurent Frantz, Yonglun Luo, Lin Lin, Zhongyin Zhou, Zhe Zhang, Zitao Chen, Leilei Cui, Ruidong Xiang, Xia Shen, Pinghua Li, Ruihua Huang, Guoqing Tang, Mingzhou Li, Yunxiang Zhao, Guoqiang Yi, Zhonglin Tang, Jicai Jiang, Fuping Zhao, Xiaolong Yuan, Xiaohong Liu, Yaosheng Chen, Xuewen Xu, Shuhong Zhao, Pengju Zhao, Chris Haley, Huaijun Zhou, Qishan Wang, Yuchun Pan, Xiangdong Ding, Li Ma, Jiaqi Li, Pau Navarro, Qin Zhang, Bingjie Li, Albert Tenesa*, Kui Li*, George E Liu*, Zhe Zhang*, Lingzhao Fang*. A compendium of genetic regulatory effects across pig tissues. Nature Genetics. 2024;56(1):112-123
7. Haonan Zeng#, Wenjing Zhang#, Qing Lin#, Yahui Gao#, Jinyan Teng, Zhiting Xu, Xiaodian Cai, Zhanming Zhong, Jun Wu, Yuqiang Liu, Shuqi Diao, Chen Wei, Wentao Gong, Xiangchun Pan, Zedong Li, Xiaoyu Huang, Xifan Chen, Jinshi Du, The PigGTEx Consortium, Fuping Zhao, Yunxiang Zhao, Maria Ballester, Daniel Crespo-Piazuelo, Marcel Amills, Alex Clop, P eter Kar lsko v-Mor t ensen, Meret e F redholm, Pinghua Li, Ruihua Huang, Guoqing Tang, Mingzhou Li, Xiaohong Liu, Yaosheng Chen, Qin Zhang, Jiaqi Li, Xiaolong Yuan, Xiangdong Ding*, Lingzhao Fang *, Zhe Zhang*. PigBiobank: a valuable resource for understanding genetic and biological mechanisms of diverse complex traits in pigs. Nucleic Acids Research. 2024;52(D1):D980-D989
8. 马烨, 刘玉强, 吴煜伟, 李广祯, 冯雪燕, 刁淑琪, 高亚辉*. 基于全基因组重测序检测中国地方猪的体型选择信号. 中国畜牧兽医. 2024;51(8): 3438 -3446
9. Yahui Gao, Alexis Marceau, Victoria Iqbal, Jose Antonio Torres-Vázquez, Mahesh Neupane, Jicai Jiang, George E Liu, Li Ma. Genome-wide association analysis of heifer livability and early first calving in Holstein cattle. BMC Genomics. 2023; 24(1):628
10. Shuli Liu#, Yahui Gao#, Oriol Canela-Xandri#, Sheng Wang#, Ying Yu#, Wentao Cai, Bingjie Li, Ruidong Xiang, Amanda J. Chamberlain, Erola Pairo-Castineira, Kenton D'Mellow, Konrad Rawlik, Charley Xia, Yuelin Yao, Pau Navarro, Dominique Rocha, Xiujin Li, Ze Yan, Congjun Li, Benjamin D. Rosen, Curtis P. Van Tassell, Paul M. Vanraden, Shengli Zhang, Li Ma, John B. Cole, George E. Liu*, Albert Tenesa*, Lingzhao Fang*. A multi-tissue atlas of regulatory variants in cattle. Nature Genetics. 2022; 54(9):1438-1447
11. Yahui Gao, Jianbin Li, Gaozhan Cai, Yujiao Wang, Wenjing Yang, Yanqin Li, Xiuxin Zhao, Rongling Li, Yundong Gao, Wenbin Tuo, Ransom L. Baldwin VI, Cong-jun Li, Lingzhao Fang, George E. Liu. Single-cell transcriptomic and chromatin accessibility analyses of dairy cattle peripheral blood mononuclear cells and their responses to lipopolysaccharide. BMC Genomics. 2022; 23(1):338
12. Yuelin Yao#, Shuli Liu#, Charley Xia#, Yahui Gao#, Zhangyuan Pan#, Oriol Canela-Xandri, Ava Khamseh, Konrad Rawlik, Sheng Wang, Bingjie Li, Yi Zhang, Erola Pairo-Castineira, Kenton D’Mellow, Xiujin Li, Ze Yan, Cong-jun Li, Ying Yu, Shengli Zhang, Li Ma, John B. Cole, Pablo J. Ross, Huaijun Zhou, Chris Haley, George E. Liu, Lingzhao Fang & Albert Tenesa. Comparative transcriptome in large-scale human and cattle populations. Genome Biology. 2022; 23(1):176
13. Yahui Gao, Shuli Liu, Ransom L. Baldwin VI, Erin E. Connor, John B. Cole, Li Ma, Lingzhao Fang*, Cong-jun Li*, George E. Liu*. Functional annotation of regulatory elements in cattle genome reveals the roles of extracellular interaction and dynamic change of chromatin states in rumen development during weaning. Genomics. 2022; 114(2):110296
14. Yahui Gao, Li Ma, George E. Liu. Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing Methods. Genes. 2022; 13(5):828
15. Yahui Gao, Lingzhao Fang, Ransom L Baldwin 6th, Erin E Connor, John B Cole, Curtis P Van Tassell, Li Ma, Cong-Jun Li, George E Liu*. Single-cell transcriptomic analyses of dairy cattle ruminal epithelial cells during weaning. Genomics. 2021; 113(4):2045-2055
16. Liu Yang#, Yahui Gao#, Adam Oswalt, Lingzhao Fang, Clarissa Boschiero, Mahesh Neupane, Charles G. Sattler, Cong-jun Li, Eyal Seroussi, Lingyang Xu, Lv Yang, Li Li, Hongping Zhang, Benjamin D. Rosen, Curtis P. Van Tassell, Yang Zhou, Li Ma, George E. Liu. Towards the detection of copy number variation from single sperm sequencing in cattle. BMC Genomics. 2022; 23:215
17. Liu Yang#, Yahui Gao#, Mingxun Li, Ki-Eun Park, Shuli Liu, Xiaolong Kang, Mei Liu, Adam Oswalt, Lingzhao Fang, Bhanu P Telugu, Charles G Sattler, Cong-Jun Li, John B Cole, Eyal Seroussi, Lingyang Xu, Lv Yang, Yang Zhou, Li Li, Hongping Zhang, Benjamin D Rosen, Curtis P Van Tassell, Li Ma, George E Liu. Genome-wide recombination map construction from single sperm sequencing in cattle. BMC Genomics. 2022; 23: 181
18. Liu Yang#, Yahui Gao#, Clarissa Boschiero, Li Li, Hongping Zhang, Li Ma*, George E. Liu*. Insights from Initial Variant Detection by Sequencing Single Sperm in Cattle. Dairy. 2021, 2(4), 649-657
19. Daniela Elena Ilie#, Yahui Gao#, Ioana Nicolae, Dongxiao Sun, Junya Li, Bo Han, Dinu Gavojdian. Evaluation of single nucleotide polymorphisms identified through the use of SNP assay in Romanian and Chinese Holstein and Simmental cattle breeds. Acta Biochim Pol. 2020; 67(3):341-346
20. Yahui Gao, Jianping Jiang, Shaohua Yang, Jie Cao, Bo Han, Yachun Wang, Yi Zhang, Ying Yu, Shengli Zhang, Qin Zhang, Lingzhao Fang, Bonnie Cantrell, Dongxiao Sun. Genome-wide association study of Mycobacterium avium Subspecies Paratuberculosis infection in Chinese Holstein. BMC Genomics. 2018; 19: 972
21. Yahui Gao, Jie Cao, Shengli Zhang, Qin Zhang, Dongxiao Sun. Heritability estimates for susceptibility to Mycobacterium avium ssp. paratuberculosis infection in Chinese Holstein cattle. Journal of Dairy Science. 2018; 101(8): 7274 - 7279
22. Yahui Gao, Mathieu Gautier, Xiangdong Ding, Hao Zhang, Yachun Wang, Xi Wang, Md Omar Faruque, Junya Li, Shaohui Ye, Xiao Gou, Jianlin Han, Johannes A Lenstra, Yi Zhang. Species composition and environmental adaptation of indigenous Chinese cattle. Scientific Reports. 2017; 7(1): 16196
23. Yahui Gao, Jianping Jiang, Shaohua Yang, Yali Ho, George E Liu, Shengli Zhang, Qin Zhang, Dongxiao Sun. CNV discovery for milk composition traits in dairy cattle using whole genome resequencing. BMC Genomics. 2017; 18(1): 265
24. Shaohua Yang#, Yahui Gao#, Shengli Zhang, Qin Zhang, Dongxiao Sun. Identification of Genetic Associations and Functional Polymorphisms of SAA1 Gene Affecting Milk Production Traits in Dairy Cattle. PLoS One. 2016; 11(9): e0162195
